IL_8Y5M_083

3D structure

PDB id

8Y5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCCU*AUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5M_083 not in the Motif Atlas

Geometric match to IL_8P9A_462

Geometric discrepancy: 0.3161

The information below is about IL_8P9A_462

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8Y5M|1|1|G|2102
8Y5M|1|1|C|2103
8Y5M|1|1|C|2104
8Y5M|1|1|U|2105
*
8Y5M|1|1|A|2184
8Y5M|1|1|U|2185
8Y5M|1|1|G|2186
8Y5M|1|1|U|2187

Current chains

Chain 1

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL1