IL_8Y5O_132

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8Y5O|1|3|A|572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5O_132 not in the Motif Atlas

Geometric match to IL_8P9A_405

Geometric discrepancy: 0.1889

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8Y5O|1|3|C|569
8Y5O|1|3|G|570
8Y5O|1|3|U|571
8Y5O|1|3|A|572
8Y5O|1|3|A|573
8Y5O|1|3|A|574
8Y5O|1|3|G|575
*
8Y5O|1|3|C|880
8Y5O|1|3|G|881

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S12