IL_8Y5P_040

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8Y5P|1|1|G|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_040 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.2015

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8Y5P|1|1|C|1196
8Y5P|1|1|G|1197
8Y5P|1|1|U|1198
*
8Y5P|1|1|A|1247
8Y5P|1|1|G|1248
8Y5P|1|1|U|1249
8Y5P|1|1|G|1250

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15

Chain q

50S ribosomal protein L20