IL_8Y5P_084

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_084 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1624

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8Y5P|1|1|C|2350
8Y5P|1|1|G|2351
8Y5P|1|1|A|2352
8Y5P|1|1|G|2353
*
8Y5P|1|1|C|2364
8Y5P|1|1|G|2365
8Y5P|1|1|A|2366
8Y5P|1|1|G|2367

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L35

Chain w

50S ribosomal protein L27