IL_8Y5P_109

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AG*CAU

Length

5 nucleotides

Bulged bases

8Y5P|1|3|A|397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_109 not in the Motif Atlas

Geometric match to IL_5J7L_002

Geometric discrepancy: 0.2943

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8Y5P|1|3|A|44
8Y5P|1|3|G|45
*
8Y5P|1|3|C|396
8Y5P|1|3|A|397
8Y5P|1|3|U|398

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16