IL_8Y5P_110

3D structure

PDB id

8Y5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCUAAC*GGG

Length

9 nucleotides

Bulged bases

8Y5P|1|3|C|48, 8Y5P|1|3|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5P_110 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.2147

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8Y5P|1|3|C|47
8Y5P|1|3|C|48
8Y5P|1|3|U|49
8Y5P|1|3|A|50
8Y5P|1|3|A|51
8Y5P|1|3|C|52
*
8Y5P|1|3|G|359
8Y5P|1|3|G|360
8Y5P|1|3|G|361

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 0

Elongation factor G

Chain Q

30S ribosomal protein S12