IL_8Y5Q_160

3D structure

PDB id

8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5Q_160 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.2486

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8Y5Q|1|3|C|1303
8Y5Q|1|3|G|1304
8Y5Q|1|3|G|1305
8Y5Q|1|3|A|1306
8Y5Q|1|3|U|1307
8Y5Q|1|3|U|1308
*
8Y5Q|1|3|A|1329
8Y5Q|1|3|U|1330
8Y5Q|1|3|G|1331
8Y5Q|1|3|A|1332
8Y5Q|1|3|A|1333
8Y5Q|1|3|G|1334

Current chains

Chain 3

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S13