IL_8Y5Q_168

3D structure

PDB id

8Y5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 4 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8Y5Q|1|3|A|1441

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5Q_168 not in the Motif Atlas

Geometric match to IL_2OZB_003

Geometric discrepancy: 0.3117

The information below is about IL_2OZB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8Y5Q|1|3|U|1440
8Y5Q|1|3|A|1441
8Y5Q|1|3|G|1442
*
8Y5Q|1|3|C|1460
8Y5Q|1|3|G|1461

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Y

30S ribosomal protein S20

Chain p

50S ribosomal protein L19