IL_8Y5R_008

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_008 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.2944

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8Y5R|1|1|C|274
8Y5R|1|1|C|275
8Y5R|1|1|U|276
8Y5R|1|1|G|277
8Y5R|1|1|A|278
8Y5R|1|1|A|279
8Y5R|1|1|U|280
8Y5R|1|1|C|281
*
8Y5R|1|1|G|359
8Y5R|1|1|U|360
8Y5R|1|1|G|361
8Y5R|1|1|A|362
8Y5R|1|1|G|363

Current chains

Chain 1

23S rRNA

Nearby chains