IL_8Y5R_017

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

8Y5R|1|1|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_017 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1415

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8Y5R|1|1|U|702
8Y5R|1|1|U|703
*
8Y5R|1|1|G|728
8Y5R|1|1|G|729
8Y5R|1|1|A|730

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2