IL_8Y5R_031
3D structure
- PDB id
- 8Y5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CCA*UG
- Length
- 5 nucleotides
- Bulged bases
- 8Y5R|1|1|C|995
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5R_031 not in the Motif Atlas
- Geometric match to IL_7A0S_032
- Geometric discrepancy: 0.2336
- The information below is about IL_7A0S_032
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 50
Unit IDs
8Y5R|1|1|C|994
8Y5R|1|1|C|995
8Y5R|1|1|A|996
*
8Y5R|1|1|U|1159
8Y5R|1|1|G|1160
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L13
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
- Chain z
- 50S ribosomal protein L30
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