IL_8Y5R_049

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8Y5R|1|1|A|1420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_049 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.0935

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8Y5R|1|1|C|1417
8Y5R|1|1|G|1418
8Y5R|1|1|A|1419
8Y5R|1|1|A|1420
8Y5R|1|1|G|1421
*
8Y5R|1|1|C|1577
8Y5R|1|1|U|1578
8Y5R|1|1|A|1579
8Y5R|1|1|A|1580
8Y5R|1|1|G|1581

Current chains

Chain 1

23S rRNA

Nearby chains