IL_8Y5R_061

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8Y5R|1|1|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_061 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.1415

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8Y5R|1|1|C|1686
8Y5R|1|1|G|1687
8Y5R|1|1|U|1688
8Y5R|1|1|A|1689
8Y5R|1|1|A|1690
8Y5R|1|1|C|1691
*
8Y5R|1|1|G|1696
8Y5R|1|1|G|1697
8Y5R|1|1|A|1698
8Y5R|1|1|G|1699
8Y5R|1|1|A|1700
8Y5R|1|1|A|1701
8Y5R|1|1|G|1702

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2