IL_8Y5R_080
3D structure
- PDB id
- 8Y5R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGGGAGGCUUUGAAGUGUGGA*UCUGCAUGGAGCCGACCUUGAAAUACCA
- Length
- 49 nucleotides
- Bulged bases
- 8Y5R|1|1|U|2132, 8Y5R|1|1|G|2157, 8Y5R|1|1|C|2164, 8Y5R|1|1|U|2172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y5R|1|1|U|2122
8Y5R|1|1|G|2123
8Y5R|1|1|G|2124
8Y5R|1|1|G|2125
8Y5R|1|1|A|2126
8Y5R|1|1|G|2127
8Y5R|1|1|G|2128
8Y5R|1|1|C|2129
8Y5R|1|1|U|2130
8Y5R|1|1|U|2131
8Y5R|1|1|U|2132
8Y5R|1|1|G|2133
8Y5R|1|1|A|2134
8Y5R|1|1|A|2135
8Y5R|1|1|G|2136
8Y5R|1|1|U|2137
8Y5R|1|1|G|2138
8Y5R|1|1|U|2139
8Y5R|1|1|G|2140
8Y5R|1|1|G|2141
8Y5R|1|1|A|2142
*
8Y5R|1|1|U|2149
8Y5R|1|1|C|2150
8Y5R|1|1|U|2151
8Y5R|1|1|G|2152
8Y5R|1|1|C|2153
8Y5R|1|1|A|2154
8Y5R|1|1|U|2155
8Y5R|1|1|G|2156
8Y5R|1|1|G|2157
8Y5R|1|1|A|2158
8Y5R|1|1|G|2159
8Y5R|1|1|C|2160
8Y5R|1|1|C|2161
8Y5R|1|1|G|2162
8Y5R|1|1|A|2163
8Y5R|1|1|C|2164
8Y5R|1|1|C|2165
8Y5R|1|1|U|2166
8Y5R|1|1|U|2167
8Y5R|1|1|G|2168
8Y5R|1|1|A|2169
8Y5R|1|1|A|2170
8Y5R|1|1|A|2171
8Y5R|1|1|U|2172
8Y5R|1|1|A|2173
8Y5R|1|1|C|2174
8Y5R|1|1|C|2175
8Y5R|1|1|A|2176
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain P
- 30S ribosomal protein S11
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