IL_8Y5R_089

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8Y5R|1|1|G|2576, 8Y5R|1|1|A|2577

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_089 not in the Motif Atlas

Geometric match to IL_7A0S_089

Geometric discrepancy: 0.1611

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8Y5R|1|1|C|2510
8Y5R|1|1|U|2511
8Y5R|1|1|C|2512
*
8Y5R|1|1|G|2574
8Y5R|1|1|C|2575
8Y5R|1|1|G|2576
8Y5R|1|1|A|2577
8Y5R|1|1|G|2578

Current chains

Chain 1

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3