IL_8Y5R_123

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5R_123 not in the Motif Atlas

Geometric match to IL_4LFB_013

Geometric discrepancy: 0.171

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8Y5R|1|3|G|292
8Y5R|1|3|G|293
*
8Y5R|1|3|U|304
8Y5R|1|3|G|305
8Y5R|1|3|A|306
8Y5R|1|3|C|307
8Y5R|1|3|C|308

Current chains

Chain 3

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S12

Chain U

30S ribosomal protein S16