IL_8Y5R_152

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8Y5R|1|3|U|1030, 8Y5R|1|3|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y5R|1|3|G|1003
8Y5R|1|3|A|1004
8Y5R|1|3|A|1005
8Y5R|1|3|G|1006
*
8Y5R|1|3|U|1023
8Y5R|1|3|G|1024
8Y5R|1|3|U|1025
8Y5R|1|3|G|1026
8Y5R|1|3|C|1027
8Y5R|1|3|C|1028
8Y5R|1|3|U|1029
8Y5R|1|3|U|1030
8Y5R|1|3|C|1031
8Y5R|1|3|G|1032
8Y5R|1|3|G|1033
8Y5R|1|3|G|1034
8Y5R|1|3|A|1035
8Y5R|1|3|A|1036
8Y5R|1|3|C|1037

Current chains

Chain 3

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14