IL_8Y5S_029
3D structure
- PDB id
- 8Y5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y5S_029 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.2123
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8Y5S|1|1|G|875
8Y5S|1|1|C|876
8Y5S|1|1|A|877
8Y5S|1|1|A|878
8Y5S|1|1|G|879
*
8Y5S|1|1|C|898
8Y5S|1|1|A|899
8Y5S|1|1|A|900
8Y5S|1|1|C|901
8Y5S|1|1|C|902
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L16
Coloring options: