IL_8Y5S_035

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8Y5S|1|1|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5S_035 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1715

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

8Y5S|1|1|U|1018
8Y5S|1|1|U|1019
8Y5S|1|1|A|1020
8Y5S|1|1|A|1021
8Y5S|1|1|G|1022
8Y5S|1|1|U|1023
8Y5S|1|1|G|1024
*
8Y5S|1|1|C|1140
8Y5S|1|1|U|1141
8Y5S|1|1|A|1142
8Y5S|1|1|A|1143
8Y5S|1|1|A|1144

Current chains

Chain 1

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain j

50S ribosomal protein L13