IL_8Y5S_045

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8Y5S|1|1|G|1332

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5S_045 not in the Motif Atlas

Geometric match to IL_9DFE_050

Geometric discrepancy: 0.1583

The information below is about IL_9DFE_050

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8Y5S|1|1|C|1319
8Y5S|1|1|C|1320
8Y5S|1|1|A|1321
8Y5S|1|1|A|1322
8Y5S|1|1|C|1323
*
8Y5S|1|1|G|1331
8Y5S|1|1|G|1332
8Y5S|1|1|G|1333

Current chains

Chain 1

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain t

50S ribosomal protein L23