IL_8Y5S_091

3D structure

PDB id

8Y5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 2) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8Y5S|1|1|A|2602

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y5S_091 not in the Motif Atlas

Geometric match to IL_8P9A_288

Geometric discrepancy: 0.3604

The information below is about IL_8P9A_288

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8Y5S|1|1|C|2591
8Y5S|1|1|G|2592
*
8Y5S|1|1|C|2601
8Y5S|1|1|A|2602
8Y5S|1|1|G|2603

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2