IL_8Y6O_004
3D structure
- PDB id
- 8Y6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.38 Å
Loop
- Sequence
- UUU*ACA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y6O_004 not in the Motif Atlas
- Geometric match to IL_5MWI_006
- Geometric discrepancy: 0.1599
- The information below is about IL_5MWI_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
8Y6O|1|J|U|10
8Y6O|1|J|U|11
8Y6O|1|J|U|12
*
8Y6O|1|K|A|39
8Y6O|1|K|C|40
8Y6O|1|K|A|41
Current chains
- Chain J
- U4atac snRNA
- Chain K
- U6atac snRNA
Nearby chains
- Chain N
- U4/U6 small nuclear ribonucleoprotein Prp3
- Chain O
- NHP2-like protein 1
- Chain Q
- Serine/threonine-protein kinase PRP4 homolog
Coloring options: