IL_8Y6O_008
3D structure
- PDB id
- 8Y6O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.38 Å
Loop
- Sequence
- AUC*GGU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y6O_008 not in the Motif Atlas
- Geometric match to IL_6OL3_002
- Geometric discrepancy: 0.1619
- The information below is about IL_6OL3_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8Y6O|1|J|A|85
8Y6O|1|J|U|86
8Y6O|1|J|C|87
*
8Y6O|1|J|G|111
8Y6O|1|J|G|112
8Y6O|1|J|U|113
Current chains
- Chain J
- U4atac snRNA
Nearby chains
- Chain X
- U11/U12 small nuclear ribonucleoprotein 25 kDa protein
- Chain Z
- Programmed cell death protein 7
- Chain h
- Small nuclear ribonucleoprotein-associated proteins B and B'
- Chain k
- Small nuclear ribonucleoprotein Sm D3
- Chain n
- Small nuclear ribonucleoprotein G
Coloring options: