IL_8Y6O_009

3D structure

PDB id

8Y6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part

Experimental method

ELECTRON MICROSCOPY

Resolution

3.38 Å

Loop

Sequence

ACU*AUUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y6O_009 not in the Motif Atlas

Geometric match to IL_9E9Q_003

Geometric discrepancy: 0.3763

The information below is about IL_9E9Q_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

8Y6O|1|J|A|89
8Y6O|1|J|C|90
8Y6O|1|J|U|91
*
8Y6O|1|J|A|106
8Y6O|1|J|U|107
8Y6O|1|J|U|108
8Y6O|1|J|U|109

Current chains

Chain J

U4atac snRNA

Nearby chains

Chain X

U11/U12 small nuclear ribonucleoprotein 25 kDa protein

Chain Z

Programmed cell death protein 7