IL_8Y6O_011

3D structure

PDB id

8Y6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP part

Experimental method

ELECTRON MICROSCOPY

Resolution

3.38 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8Y6O|1|P|U|112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y6O_011 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2886

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8Y6O|1|P|G|111
8Y6O|1|P|U|112
8Y6O|1|P|G|113
*
8Y6O|1|P|C|123
8Y6O|1|P|C|124

Current chains

Chain P

U11 snRNA

Nearby chains

Chain Z

Programmed cell death protein 7