IL_8YDE_011
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8YDE|1|1|A|504, 8YDE|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDE_011 not in the Motif Atlas
- Geometric match to IL_8B0X_075
- Geometric discrepancy: 0.0805
- The information below is about IL_8B0X_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.1
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 9
Unit IDs
8YDE|1|1|G|481
8YDE|1|1|A|482
8YDE|1|1|A|483
8YDE|1|1|C|484
*
8YDE|1|1|G|496
8YDE|1|1|A|497
8YDE|1|1|G|498
8YDE|1|1|U|499
8YDE|1|1|G|500
8YDE|1|1|A|501
8YDE|1|1|A|502
8YDE|1|1|A|503
8YDE|1|1|A|504
8YDE|1|1|A|505
8YDE|1|1|G|506
8YDE|1|1|A|507
8YDE|1|1|A|508
8YDE|1|1|C|509
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain s
- 50S ribosomal protein L22
- Chain u
- 50S ribosomal protein L24
Coloring options: