IL_8YDE_065
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 8YDE|1|1|A|1801, 8YDE|1|1|C|1816, 8YDE|1|1|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDE_065 not in the Motif Atlas
- Geometric match to IL_8B0X_132
- Geometric discrepancy: 0.0994
- The information below is about IL_8B0X_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8YDE|1|1|U|1798
8YDE|1|1|G|1799
8YDE|1|1|C|1800
8YDE|1|1|A|1801
8YDE|1|1|A|1802
8YDE|1|1|A|1803
8YDE|1|1|C|1804
*
8YDE|1|1|G|1813
8YDE|1|1|G|1814
8YDE|1|1|A|1815
8YDE|1|1|C|1816
8YDE|1|1|G|1817
8YDE|1|1|U|1818
8YDE|1|1|A|1819
8YDE|1|1|U|1820
8YDE|1|1|A|1821
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain b
- 50S ribosomal protein L2
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