IL_8YDE_069

3D structure

PDB id

8YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDE|1|1|U|1851
8YDE|1|1|U|1852
8YDE|1|1|A|1853
8YDE|1|1|A|1854
8YDE|1|1|U|1855
8YDE|1|1|U|1856
8YDE|1|1|G|1857
8YDE|1|1|A|1858
8YDE|1|1|U|1859
8YDE|1|1|G|1860
*
8YDE|1|1|U|1882
8YDE|1|1|U|1883
8YDE|1|1|G|1884
8YDE|1|1|A|1885
8YDE|1|1|U|1886
8YDE|1|1|C|1887
8YDE|1|1|G|1888
8YDE|1|1|A|1889
8YDE|1|1|A|1890
8YDE|1|1|G|1891

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA