IL_8YDE_127
3D structure
- PDB id
- 8YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 3) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDE_127 not in the Motif Atlas
- Geometric match to IL_8B0X_019
- Geometric discrepancy: 0.2202
- The information below is about IL_8B0X_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YDE|1|3|U|409
8YDE|1|3|G|410
8YDE|1|3|A|411
8YDE|1|3|A|412
8YDE|1|3|G|413
8YDE|1|3|A|414
8YDE|1|3|A|415
8YDE|1|3|G|416
*
8YDE|1|3|U|427
8YDE|1|3|G|428
8YDE|1|3|U|429
8YDE|1|3|A|430
8YDE|1|3|A|431
8YDE|1|3|A|432
8YDE|1|3|G|433
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
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