IL_8YDF_014

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_014 not in the Motif Atlas

Geometric match to IL_8B0X_079

Geometric discrepancy: 0.1363

The information below is about IL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8YDF|1|1|C|672
8YDF|1|1|C|673
8YDF|1|1|G|674
*
8YDF|1|1|C|806
8YDF|1|1|U|807
8YDF|1|1|G|808

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15