IL_8YDF_045

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8YDF|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_045 not in the Motif Atlas

Geometric match to IL_8B0X_110

Geometric discrepancy: 0.1373

The information below is about IL_8B0X_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8YDF|1|1|C|1319
8YDF|1|1|C|1320
8YDF|1|1|A|1321
8YDF|1|1|A|1322
8YDF|1|1|C|1323
*
8YDF|1|1|G|1331
8YDF|1|1|G|1332
8YDF|1|1|G|1333

Current chains

Chain 1

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain t

50S ribosomal protein L23