IL_8YDF_061

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8YDF|1|1|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_061 not in the Motif Atlas

Geometric match to IL_8B0X_127

Geometric discrepancy: 0.1296

The information below is about IL_8B0X_127

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8YDF|1|1|C|1686
8YDF|1|1|G|1687
8YDF|1|1|U|1688
8YDF|1|1|A|1689
8YDF|1|1|A|1690
8YDF|1|1|C|1691
*
8YDF|1|1|G|1696
8YDF|1|1|G|1697
8YDF|1|1|A|1698
8YDF|1|1|G|1699
8YDF|1|1|A|1700
8YDF|1|1|A|1701
8YDF|1|1|G|1702

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2