IL_8YDF_065

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8YDF|1|1|A|1801, 8YDF|1|1|C|1816, 8YDF|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_065 not in the Motif Atlas

Geometric match to IL_8B0X_132

Geometric discrepancy: 0.0994

The information below is about IL_8B0X_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8YDF|1|1|U|1798
8YDF|1|1|G|1799
8YDF|1|1|C|1800
8YDF|1|1|A|1801
8YDF|1|1|A|1802
8YDF|1|1|A|1803
8YDF|1|1|C|1804
*
8YDF|1|1|G|1813
8YDF|1|1|G|1814
8YDF|1|1|A|1815
8YDF|1|1|C|1816
8YDF|1|1|G|1817
8YDF|1|1|U|1818
8YDF|1|1|A|1819
8YDF|1|1|U|1820
8YDF|1|1|A|1821

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2