IL_8YDF_087

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_087 not in the Motif Atlas

Geometric match to IL_8B0X_153

Geometric discrepancy: 0.117

The information below is about IL_8B0X_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8YDF|1|1|C|2466
8YDF|1|1|C|2467
8YDF|1|1|A|2468
8YDF|1|1|A|2469
8YDF|1|1|G|2470
*
8YDF|1|1|C|2480
8YDF|1|1|G|2481
8YDF|1|1|A|2482
8YDF|1|1|C|2483
8YDF|1|1|G|2484

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain F

50S ribosomal protein L36

Chain m

50S ribosomal protein L16