IL_8YDF_094

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_094 not in the Motif Atlas

Geometric match to IL_8B0X_161

Geometric discrepancy: 0.0898

The information below is about IL_8B0X_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8YDF|1|1|C|2652
8YDF|1|1|U|2653
8YDF|1|1|A|2654
8YDF|1|1|G|2655
8YDF|1|1|U|2656
8YDF|1|1|A|2657
8YDF|1|1|C|2658
*
8YDF|1|1|G|2663
8YDF|1|1|G|2664
8YDF|1|1|A|2665
8YDF|1|1|C|2666
8YDF|1|1|C|2667
8YDF|1|1|G|2668

Current chains

Chain 1

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L6