IL_8YDF_157
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDF_157 not in the Motif Atlas
- Geometric match to IL_8B0X_049
- Geometric discrepancy: 0.1684
- The information below is about IL_8B0X_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68118.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
8YDF|1|3|G|1061
8YDF|1|3|U|1062
8YDF|1|3|C|1063
*
8YDF|1|3|G|1193
8YDF|1|3|U|1194
8YDF|1|3|C|1195
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S5
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
Coloring options: