IL_8YDF_165

3D structure

PDB id

8YDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8YDF|1|3|C|1400, 8YDF|1|3|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDF_165 not in the Motif Atlas

Geometric match to IL_8B0X_057

Geometric discrepancy: 0.0809

The information below is about IL_8B0X_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8YDF|1|3|C|1399
8YDF|1|3|C|1400
8YDF|1|3|G|1401
*
8YDF|1|3|C|1501
8YDF|1|3|A|1502
8YDF|1|3|A|1503
8YDF|1|3|G|1504

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 4

mRNA

Chain 6

Transfer RNA; tRNA