IL_8YDG_005

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_005 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.1352

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8YDG|1|1|C|239
8YDG|1|1|C|240
8YDG|1|1|A|241
8YDG|1|1|G|242
8YDG|1|1|U|243
8YDG|1|1|A|244
8YDG|1|1|G|245
*
8YDG|1|1|C|253
8YDG|1|1|G|254
8YDG|1|1|A|255
8YDG|1|1|A|256
8YDG|1|1|C|257
8YDG|1|1|G|258

Current chains

Chain 1

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L35

Chain l

50S ribosomal protein L15