IL_8YDG_041

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8YDG|1|1|A|1205

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_041 not in the Motif Atlas

Geometric match to IL_9DFE_045

Geometric discrepancy: 0.2582

The information below is about IL_9DFE_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YDG|1|1|G|1202
8YDG|1|1|U|1203
8YDG|1|1|A|1204
8YDG|1|1|A|1205
8YDG|1|1|G|1206
*
8YDG|1|1|U|1240
8YDG|1|1|A|1241
8YDG|1|1|U|1242
8YDG|1|1|C|1243

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15