IL_8YDG_052

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

8YDG|1|1|U|1523

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDG_052 not in the Motif Atlas

Geometric match to IL_8B0X_118

Geometric discrepancy: 0.1671

The information below is about IL_8B0X_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8YDG|1|1|U|1468
8YDG|1|1|A|1469
8YDG|1|1|A|1470
8YDG|1|1|G|1471
*
8YDG|1|1|U|1520
8YDG|1|1|G|1521
8YDG|1|1|A|1522
8YDG|1|1|U|1523
8YDG|1|1|G|1524

Current chains

Chain 1

23S rRNA

Nearby chains