IL_8YDG_080
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CCUUGAUGUGUAGGAUAGG*CCCUUUAAUG
- Length
- 29 nucleotides
- Bulged bases
- 8YDG|1|1|U|2111, 8YDG|1|1|U|2118, 8YDG|1|1|A|2119
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDG|1|1|C|2103
8YDG|1|1|C|2104
8YDG|1|1|U|2105
8YDG|1|1|U|2106
8YDG|1|1|G|2107
8YDG|1|1|A|2108
8YDG|1|1|U|2109
8YDG|1|1|G|2110
8YDG|1|1|U|2111
8YDG|1|1|G|2112
8YDG|1|1|U|2113
8YDG|1|1|A|2114
8YDG|1|1|G|2115
8YDG|1|1|G|2116
8YDG|1|1|A|2117
8YDG|1|1|U|2118
8YDG|1|1|A|2119
8YDG|1|1|G|2120
8YDG|1|1|G|2121
*
8YDG|1|1|C|2177
8YDG|1|1|C|2178
8YDG|1|1|C|2179
8YDG|1|1|U|2180
8YDG|1|1|U|2181
8YDG|1|1|U|2182
8YDG|1|1|A|2183
8YDG|1|1|A|2184
8YDG|1|1|U|2185
8YDG|1|1|G|2186
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain L
- 30S ribosomal protein S7
- Chain a
- Large ribosomal subunit protein uL1
Coloring options: