IL_8YDG_081
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GGAGG*CCGACCUUGAAAUAC
- Length
- 20 nucleotides
- Bulged bases
- 8YDG|1|1|C|2165, 8YDG|1|1|U|2166, 8YDG|1|1|A|2171, 8YDG|1|1|U|2172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDG|1|1|G|2124
8YDG|1|1|G|2125
8YDG|1|1|A|2126
8YDG|1|1|G|2127
8YDG|1|1|G|2128
*
8YDG|1|1|C|2160
8YDG|1|1|C|2161
8YDG|1|1|G|2162
8YDG|1|1|A|2163
8YDG|1|1|C|2164
8YDG|1|1|C|2165
8YDG|1|1|U|2166
8YDG|1|1|U|2167
8YDG|1|1|G|2168
8YDG|1|1|A|2169
8YDG|1|1|A|2170
8YDG|1|1|A|2171
8YDG|1|1|U|2172
8YDG|1|1|A|2173
8YDG|1|1|C|2174
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain a
- Large ribosomal subunit protein uL1
Coloring options: