IL_8YDG_082

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GCUUUGAAGUGU*GCAUGGAGC

Length

21 nucleotides

Bulged bases

8YDG|1|1|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDG|1|1|G|2128
8YDG|1|1|C|2129
8YDG|1|1|U|2130
8YDG|1|1|U|2131
8YDG|1|1|U|2132
8YDG|1|1|G|2133
8YDG|1|1|A|2134
8YDG|1|1|A|2135
8YDG|1|1|G|2136
8YDG|1|1|U|2137
8YDG|1|1|G|2138
8YDG|1|1|U|2139
*
8YDG|1|1|G|2152
8YDG|1|1|C|2153
8YDG|1|1|A|2154
8YDG|1|1|U|2155
8YDG|1|1|G|2156
8YDG|1|1|G|2157
8YDG|1|1|A|2158
8YDG|1|1|G|2159
8YDG|1|1|C|2160

Current chains

Chain 1

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL1