IL_8YDG_092
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GCUCA*UACGCGAGC
- Length
- 14 nucleotides
- Bulged bases
- 8YDG|1|1|A|2572, 8YDG|1|1|C|2573, 8YDG|1|1|G|2576, 8YDG|1|1|A|2577
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDG|1|1|G|2509
8YDG|1|1|C|2510
8YDG|1|1|U|2511
8YDG|1|1|C|2512
8YDG|1|1|A|2513
*
8YDG|1|1|U|2571
8YDG|1|1|A|2572
8YDG|1|1|C|2573
8YDG|1|1|G|2574
8YDG|1|1|C|2575
8YDG|1|1|G|2576
8YDG|1|1|A|2577
8YDG|1|1|G|2578
8YDG|1|1|C|2579
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
Coloring options: