IL_8YDG_136
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 8YDG|1|3|U|632
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDG_136 not in the Motif Atlas
- Geometric match to IL_8B0X_029
- Geometric discrepancy: 0.1612
- The information below is about IL_8B0X_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8YDG|1|3|U|605
8YDG|1|3|G|606
8YDG|1|3|A|607
8YDG|1|3|A|608
8YDG|1|3|A|609
8YDG|1|3|U|610
8YDG|1|3|C|611
8YDG|1|3|C|612
*
8YDG|1|3|G|628
8YDG|1|3|A|629
8YDG|1|3|A|630
8YDG|1|3|C|631
8YDG|1|3|U|632
8YDG|1|3|G|633
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
- Chain M
- 30S ribosomal protein S8
- Chain U
- 30S ribosomal protein S16
- Chain V
- 30S ribosomal protein S17
Coloring options: