IL_8YDG_149

3D structure

PDB id

8YDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

8YDG|1|3|U|1030, 8YDG|1|3|C|1031, 8YDG|1|3|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDG|1|3|G|1003
8YDG|1|3|A|1004
8YDG|1|3|A|1005
8YDG|1|3|G|1006
*
8YDG|1|3|U|1023
8YDG|1|3|G|1024
8YDG|1|3|U|1025
8YDG|1|3|G|1026
8YDG|1|3|C|1027
8YDG|1|3|C|1028
8YDG|1|3|U|1029
8YDG|1|3|U|1030
8YDG|1|3|C|1031
8YDG|1|3|G|1032
8YDG|1|3|G|1033
8YDG|1|3|G|1034
8YDG|1|3|A|1035
8YDG|1|3|A|1036
8YDG|1|3|C|1037

Current chains

Chain 3

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14