IL_8YDH_013

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

UUAAC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDH_013 not in the Motif Atlas

Geometric match to IL_8B0X_078

Geometric discrepancy: 0.0813

The information below is about IL_8B0X_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8YDH|1|1|U|606
8YDH|1|1|U|607
8YDH|1|1|A|608
8YDH|1|1|A|609
8YDH|1|1|C|610
*
8YDH|1|1|G|618
8YDH|1|1|G|619
8YDH|1|1|G|620
8YDH|1|1|A|621
8YDH|1|1|G|622

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15