IL_8YDH_017

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

UU*GGA

Length

5 nucleotides

Bulged bases

8YDH|1|1|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDH_017 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1417

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8YDH|1|1|U|702
8YDH|1|1|U|703
*
8YDH|1|1|G|728
8YDH|1|1|G|729
8YDH|1|1|A|730

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2