IL_8YDH_038
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8YDH_038 not in the Motif Atlas
- Geometric match to IL_8B0X_103
- Geometric discrepancy: 0.1407
- The information below is about IL_8B0X_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
8YDH|1|1|G|1038
8YDH|1|1|A|1039
8YDH|1|1|A|1040
8YDH|1|1|G|1041
*
8YDH|1|1|C|1114
8YDH|1|1|G|1115
8YDH|1|1|G|1116
8YDH|1|1|C|1117
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
- Chain m
- 50S ribosomal protein L16
- Chain v
- 50S ribosomal protein L25
Coloring options: