IL_8YDH_043

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8YDH|1|1|A|1205

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8YDH_043 not in the Motif Atlas

Homologous match to IL_8B0X_106

Geometric discrepancy: 0.1082

The information below is about IL_8B0X_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDH|1|1|G|1202
8YDH|1|1|U|1203
8YDH|1|1|A|1204
8YDH|1|1|A|1205
8YDH|1|1|G|1206
*
8YDH|1|1|U|1240
8YDH|1|1|A|1241
8YDH|1|1|U|1242
8YDH|1|1|C|1243

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15